getPCaSummarySurv: Create survival summary for metadata in curatedPCaData

In Syksy/curatedPCaData: Curated Prostate Cancer Data

Create survival summary for metadata in curatedPCaData

Description

Create summary for survival-like columns (0/1 event with follow-up time) for colData metadata in curatedPCaData

Usage

getPCaSummarySurv(maes, event.name, time.name)

Arguments

maes	List of MultiAssayExperiment objects to summarize
event.name	Name for the colData column for the end-point event; typically one of 'days_to_disease_specific_recurrence' or 'days_to_overall_survival'
time.name	Name for the colData column for the time for the end-point until event or censoring; typically one of 'disease_specific_recurrence_status' or 'overall_survival_status'

Value

A matrix describing the event and follow-up information as character strings

Examples

mae_taylor <- getPCa('taylor')
mae_tcga <- getPCa('tcga')
getPCaSummarySurv(maes = list(Taylor = mae_taylor, TCGA = mae_tcga), 
    event.name = 'disease_specific_recurrence_status', time.name = 
    'days_to_disease_specific_recurrence')

Syksy/curatedPCaData documentation built on Nov. 4, 2023, 9:46 a.m.