View source: R/getpcasummaries.R
getPCaSummarySurv | R Documentation |
Create summary for survival-like columns (0/1 event with follow-up time) for colData metadata in curatedPCaData
getPCaSummarySurv(maes, event.name, time.name)
maes |
List of MultiAssayExperiment objects to summarize |
event.name |
Name for the colData column for the end-point event; typically one of 'days_to_disease_specific_recurrence' or 'days_to_overall_survival' |
time.name |
Name for the colData column for the time for the end-point until event or censoring; typically one of 'disease_specific_recurrence_status' or 'overall_survival_status' |
A matrix describing the event and follow-up information as character strings
mae_taylor <- getPCa('taylor')
mae_tcga <- getPCa('tcga')
getPCaSummarySurv(maes = list(Taylor = mae_taylor, TCGA = mae_tcga),
event.name = 'disease_specific_recurrence_status', time.name =
'days_to_disease_specific_recurrence')
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