curatedPCaDatasets_baca: Baca et al. MAE-object

curatedPCaDatasets_bacaR Documentation

Baca et al. MAE-object

Description

MultiAssayExperiment object containing copy number alteration (cna) and mutations for Baca et al.

Format

A MAE object spanning 56 prostate cancer samples.

cna.gistic

matrix with 20124 rows and 56 columns, from GISTIC discretized copy number alteration calls.

mut

RaggedExperiment with 2734 rows and 57 columns, mutation data from cbioportal

Value

A MultiAssayExperiment corresponding to the study and its available omics.

Source

https://www.cbioportal.org/study/summary?id=prad_broad_2013

Examples

mae_baca <- getPCa('baca')

Syksy/curatedPCaData documentation built on Oct. 11, 2024, 7:05 a.m.