curatedPCaDatasets_baca: Baca et al. MAE-object
In Syksy/curatedPCaData: Curated Prostate Cancer Data
curatedPCaDatasets_baca R Documentation
Baca et al. MAE-object
Description
MultiAssayExperiment object containing copy number alteration (cna) and
mutations for Baca et al.
Format
A MAE object spanning 56 prostate cancer samples.
- cna.gistic
matrix with 20124 rows and 56 columns, from GISTIC
discretized copy number alteration calls.
- mut
RaggedExperiment with 2734 rows and 57 columns, mutation data
from cbioportal
Value
A MultiAssayExperiment corresponding to the study and its available
omics.
Source
https://www.cbioportal.org/study/summary?id=prad_broad_2013
Examples
mae_baca <- getPCa('baca')
Syksy/curatedPCaData documentation built on Nov. 4, 2023, 9:46 a.m.
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| curatedPCaDatasets_baca | R Documentation |
Baca et al. MAE-object
Description
MultiAssayExperiment object containing copy number alteration (cna) and mutations for Baca et al.
Format
A MAE object spanning 56 prostate cancer samples.
- cna.gistic
matrix with 20124 rows and 56 columns, from GISTIC discretized copy number alteration calls.
- mut
RaggedExperiment with 2734 rows and 57 columns, mutation data from cbioportal
Value
A MultiAssayExperiment corresponding to the study and its available omics.
Source
https://www.cbioportal.org/study/summary?id=prad_broad_2013
Examples
mae_baca <- getPCa('baca')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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