curatedPCaDatasets_kim: Kim et al. MAE-object

In Syksy/curatedPCaData: Curated Prostate Cancer Data

Kim et al. MAE-object

Description

MultiAssayExperiment object containing gene expression (gex) and immune cell estimates from Kim et al.

Format

An MAE object spanning 266 men with prostate cancer

gex.rma

matrix with 17638 rows and 266 columns, of gene expression data

cibersort

matrix with 22 rows and 266 columns, of cibersort based deconvolution data

xcell

matrix with 39 rows and 266 columns, of xcell based deconvolution data

epic

matrix with 8 rows and 266 columns, of epic based deconvolution data

quantiseq

matrix with 11 rows and 266 columns, of quantiseq based deconvolution data

estimate

data.frame with 4 rows and 266 columns, of cell types based on ESTIMATE method

scores

matrix with 2 rows and 266 columns, of risk scores and AR scores

mcp

matrix with 11 rows and 266 columns, of mcp-counter based deconvolution data

Details

The dataset consists of 266 NCCN very low/low or favorable-intermediate risk PCa patients

Value

A MultiAssayExperiment corresponding to the study and its available

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE119616

References

(PubMed)

Examples

mae_kim <- getPCa('kim')

Syksy/curatedPCaData documentation built on Nov. 4, 2023, 9:46 a.m.