curatedPCaDatasets_kim | R Documentation |
MultiAssayExperiment object containing gene expression (gex) and immune cell estimates from Kim et al.
An MAE object spanning 266 men with prostate cancer
matrix with 17638 rows and 266 columns, of gene expression data
matrix with 22 rows and 266 columns, of cibersort based deconvolution data
matrix with 39 rows and 266 columns, of xcell based deconvolution data
matrix with 8 rows and 266 columns, of epic based deconvolution data
matrix with 11 rows and 266 columns, of quantiseq based deconvolution data
data.frame with 4 rows and 266 columns, of cell types based on ESTIMATE method
matrix with 2 rows and 266 columns, of risk scores and AR scores
matrix with 11 rows and 266 columns, of mcp-counter based deconvolution data
The dataset consists of 266 NCCN very low/low or favorable-intermediate risk PCa patients
A MultiAssayExperiment corresponding to the study and its available
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE119616
(PubMed)
mae_kim <- getPCa('kim')
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