curatedPCaDatasets_icgcca: ICGC CA MAE-object
In Syksy/curatedPCaData: Curated Prostate Cancer Data

curatedPCaDatasets_icgcca

R Documentation

ICGC CA MAE-object

MultiAssayExperiment object containing gene expression (gex) and immune cell estimates for the ICGC CA (Canadian) cohort.

An MAE object spanning 213 men with prostate cancer

gex.rma: matrix with 17208 rows and 213 columns, of gene expression data
cibersort: matrix with 22 rows and 213 columns, of cibersort based deconvolution data
xcell: matrix with 39 rows and 213 columns, of xcell based deconvolution data
epic: matrix with 8 rows and 213 columns, of epic based deconvolution data
quantiseq: matrix with 11 rows and 213 columns, of quantiseq based deconvolution data
estimate: data.frame with 4 rows and 213 columns, of cell types based on ESTIMATE method
scores: matrix with 4 rows and 213 columns, of risk scores and AR scores
mcp: matrix with 11 rows and 213 columns, of mcp-counter based deconvolution data