curatedPCaDatasets_wang | R Documentation |
MultiAssayExperiment object containing gene expression (gex) and immune cell estimates from Wang et al.
An MAE object spanning 148 men with prostate cancer
matrix with 12798 rows and 148 columns, of gene expression data
matrix with 22 rows and 148 columns, of cibersort based deconvolution data
matrix with 39 rows and 148 columns, of xcell based deconvolution data
matrix with 8 rows and 148 columns, of epic based deconvolution data
matrix with 11 rows and 148 columns, of quantiseq based deconvolution data
data.frame with 4 rows and 148 columns, of cell types based on ESTIMATE method
matrix with 4 rows and 148 columns, of risk scores and AR scores
matrix with 11 rows and 148 columns, of mcp-counter based deconvolution data
148 prostate samples, with various amounts of tumor, stroma, BPH and atrophic gland, were used for this study.
A MultiAssayExperiment corresponding to the study and its available omics.
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE8218
(PubMed)
mae_wang <- getPCa('wang')
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