curatedPCaDatasets_wang: Wang et al. MAE-object

curatedPCaDatasets_wangR Documentation

Wang et al. MAE-object

Description

MultiAssayExperiment object containing gene expression (gex) and immune cell estimates from Wang et al.

Format

An MAE object spanning 148 men with prostate cancer

gex.rma

matrix with 12798 rows and 148 columns, of gene expression data

cibersort

matrix with 22 rows and 148 columns, of cibersort based deconvolution data

xcell

matrix with 39 rows and 148 columns, of xcell based deconvolution data

epic

matrix with 8 rows and 148 columns, of epic based deconvolution data

quantiseq

matrix with 11 rows and 148 columns, of quantiseq based deconvolution data

estimate

data.frame with 4 rows and 148 columns, of cell types based on ESTIMATE method

scores

matrix with 4 rows and 148 columns, of risk scores and AR scores

mcp

matrix with 11 rows and 148 columns, of mcp-counter based deconvolution data

Details

148 prostate samples, with various amounts of tumor, stroma, BPH and atrophic gland, were used for this study.

Value

A MultiAssayExperiment corresponding to the study and its available omics.

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE8218

References

(PubMed)

Examples

mae_wang <- getPCa('wang')

Syksy/curatedPCaData documentation built on Oct. 11, 2024, 7:05 a.m.