curatedPCaDatasets_chandran: Chandran et al., Yu et al. MAE-object
In Syksy/curatedPCaData: Curated Prostate Cancer Data

curatedPCaDatasets_chandran

R Documentation

Chandran et al., Yu et al. MAE-object

MultiAssayExperiment object containing gene expression (gex) and immune cell estimates for Chandran et al., Yu et al.

An MAE object spanning 171 men with prostate cancer

gex.rma: matrix with 9007 rows and 171 columns, for the gene expression data
cibersort: matrix with 22 rows and 171 columns, of cibersort based deconvolution data
xcell: matrix with 39 rows and 171 columns, of xcell based deconvolution data
epic: matrix with 8 rows and 171 columns, of epic based deconvolution data
quantiseq: matrix with 11 rows and 171 columns, of quantiseq based deconvolution data
estimate: data.frame with 4 rows and 171 columns, of cell types based on ESTIMATE method
scores: matrix with 4 rows and 171 columns, of risk scores and AR scores
mcp: matrix with 11 rows and 171 columns, of mcp-counter based deconvolution data