curatedPCaDatasets_weiner: Weiner et al. MAE-object

In Syksy/curatedPCaData: Curated Prostate Cancer Data

Weiner et al. MAE-object

Description

A MultiAssayExperiment object containing gene expression (gex) and immune cell estimates for Weiner et al.

Format

An MAE spanning 838 prostate cancer samples of two cohorts

gex.rma

matrix of 17410 rows and 838 columns of gene expression data

cibersort

matrix with 22 rows and 838 columns, of cibersort based deconvolution data

xcell

matrix with 39 rows and 838 columns, the xcell deconvolution of the expression data

epic

matrix with 8 rows and 838 columns, the epic deconvolution of the expression data

quantiseq

matrix with 11 rows and 838 columns, the quantiseq deconvolution of the expression data

estimate

data.frame with 4 rows and 838 columns, of cell types based on ESTIMATE method

scores

matrix with 4 rows and 838 columns, of risk scores and AR scores

mcp

matrix with 11 rows and 838 columns, the mcp-counter deconvolution of the expression data

Value

A MultiAssayExperiment corresponding to the study and its available omics.

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE157548

References

(PubMed)

Examples

mae_weiner <- getPCa('weiner')

Syksy/curatedPCaData documentation built on Nov. 4, 2023, 9:46 a.m.