curatedPCaDatasets_wallace: Wallace et al. MAE-object

curatedPCaDatasets_wallaceR Documentation

Wallace et al. MAE-object

Description

MultiAssayExperiment object containing gene expression (gex) and immune cell estimates from Wallace et al.

Format

An MAE object spanning 83 men with prostate cancer

gex.rma

matrix with 12783 rows and 89 columns, of gene expression data

cibersort

matrix with 22 rows and 83 columns, of cibersort based deconvolution data

xcell

matrix with 39 rows and 89 columns, of xcell based deconvolution data

epic

matrix with 8 rows and 89 columns, of epic based deconvolution data

quantiseq

matrix with 11 rows and 89 columns, of quantiseq based deconvolution data

estimate

data.frame with 4 rows and 89 columns, of cell types based on ESTIMATE method

scores

matrix with 4 rows and 89 columns, of risk scores and AR scores

mcp

matrix with 11 rows and 89 columns, of mcp-counter based deconvolution data

Value

A MultiAssayExperiment corresponding to the study and its available omics.

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6956

References

(PubMed)

Examples

mae_wallace <- getPCa('wallace')

Syksy/curatedPCaData documentation built on Oct. 11, 2024, 7:05 a.m.