Files in TGuillerme/dispRity

Measuring Disparity

.github/issue_template.bug.md NEWS.md R/Claddis.ordination.R R/Claddis.ordination_fun.R R/MCMCglmm.subsets.R R/MCMCglmm.subsets_fun.R R/MCMCglmm.utilities.R R/MCMCglmm.utilities_fun.R R/adonis.dispRity.R R/adonis.dispRity_fun.R R/as.covar.R R/as.covar_fun.R R/bhatt.coeff.R R/boot.matrix.R R/boot.matrix_fun.R R/char.diff.R R/char.diff_fun.R R/check.morpho.R R/chrono.subsets.R R/chrono.subsets_fun.R R/clean.data.R R/clean.data_fun.R R/covar.plot.R R/covar.plot_fun.R R/covar.utilities.R R/covar.utilities_fun.R R/crown.stem.R R/custom.subsets.R R/custom.subsets_fun.R R/dispRity-package.R R/dispRity.R R/dispRity.covar.projections.R R/dispRity.covar.projections_fun.R R/dispRity.fast.R R/dispRity.metric.R R/dispRity.multi.R R/dispRity.utilities.R R/dispRity.utilities_fun.R R/dispRity.wrapper.R R/dispRity_fun.R R/distance.randtest.R R/dtt.dispRity.R R/dtt.dispRity_fun.R R/fit.ace.model.R R/geomorph.ordination.R R/geomorph.ordination_fun.R R/get.bin.ages.R R/make.demo.data.R R/make.metric.R R/make.metric_fun.R R/match.tip.edge.R R/model.test.R R/model.test.sim.R R/model.test.wrapper.R R/model.test_fun.R R/morpho.utilities.R R/morpho.utilities_fun.R R/multi.ace.R R/multi.ace_fun.R R/null.test.R R/null.test_fun.R R/pair.plot.R R/pair.plot_fun.R R/pgls.dispRity.R R/plot.char.diff.R R/plot.char.diff_fun.R R/plot.dispRity.R R/plot.dispRity_fun.R R/print.dispRity.R R/randtest.dispRity.R R/randtest.dispRity_fun.R R/reduce.matrix.R R/reduce.space.R R/reduce.space_fun.R R/remove.zero.brlen.R R/sanitizing.R R/select.axes.R R/sequential.test.R R/sequential.test_fun.R R/set.root.time.R R/sim.morpho.R R/sim.morpho_fun.R R/slice.tree.R R/slice.tree_fun.R R/slide.nodes.R R/slide.nodes_fun.R R/space.maker.R R/space.maker_fun.R R/summary.dispRity.R R/summary.dispRity_fun.R R/test.dispRity.R R/test.dispRity_fun.R R/test.metric.R R/test.metric_fun.R R/tree.age.R R/tree.age_fun.R R/zzz.R README.md TODO.md curves.differences/curve.differences.R inst/gitbook/01_glossary.Rmd inst/gitbook/02_getting-started.Rmd inst/gitbook/03_specific-tutorials.Rmd inst/gitbook/04_making-up-data.Rmd inst/gitbook/05_other-functionalities.Rmd inst/gitbook/06_guts.Rmd inst/gitbook/07_ecology-demo.Rmd inst/gitbook/08_palaeo-demo.Rmd inst/gitbook/09_gmm-demo.Rmd inst/gitbook/10_references.Rmd inst/gitbook/_book/dispRity_manual.pdf inst/gitbook/dispRity_fun.pdf inst/gitbook/index.Rmd inst/vignettes/Developer_resources.Rmd inst/vignettes/Projection_analysis.Rmd inst/vignettes/dispRity_workhop_code.Rmd inst/vignettes/generating_inapplicable_characters.Rmd inst/vignettes/model_test_vignette.Rmd inst/vignettes/select_disparity_metrics.Rmd inst/vignettes/test.rotation.R man/BeckLee.Rd man/BeckLee_disparity.Rd man/Claddis.ordination.Rd man/MCMCglmm.subsets.Rd man/MCMCglmm.utilities.Rd man/add.tree.Rd man/adonis.dispRity.Rd man/apply.NA.Rd man/as.covar.Rd man/bhatt.coeff.Rd man/boot.matrix.Rd man/char.diff.Rd man/charadriiformes.Rd man/check.morpho.Rd man/chrono.subsets.Rd man/clean.data.Rd man/covar.plot.Rd man/covar.utilities.Rd man/crown.stem.Rd man/custom.subsets.Rd man/demo_data.Rd man/dispRity-package.Rd man/dispRity.Rd man/dispRity.covar.projections.Rd man/dispRity.fast.Rd man/dispRity.metric.Rd man/dispRity.per.group.Rd man/dispRity.through.time.Rd man/disparity.Rd man/distance.randtest.Rd man/dtt.dispRity.Rd man/extinction.subsets.Rd man/geomorph.ordination.Rd man/get.bin.ages.Rd man/get.contrast.matrix.Rd man/get.matrix.Rd man/get.subsets.Rd man/make.dispRity.Rd man/make.metric.Rd man/match.tip.edge.Rd man/model.test.Rd man/model.test.sim.Rd man/model.test.wrapper.Rd man/multi.ace.Rd man/null.test.Rd man/pair.plot.Rd man/pgls.dispRity.Rd man/plot.char.diff.Rd man/plot.dispRity.Rd man/print.dispRity.Rd man/random.circle.Rd man/randtest.dispRity.Rd man/reduce.matrix.Rd man/reduce.space.Rd man/remove.zero.brlen.Rd man/scale.dispRity.Rd man/select.axes.Rd man/set.root.time.Rd man/sim.morpho.Rd man/slice.tree.Rd man/slide.nodes.Rd man/sort.dispRity.Rd man/space.maker.Rd man/summary.dispRity.Rd man/test.dispRity.Rd man/test.metric.Rd man/tree.age.Rd tests/testthat.R tests/testthat/dev-test-sequential.test.R tests/testthat/make.data/MorphDistMatrix.verbose.R tests/testthat/make.data/anc.state.R tests/testthat/make.data/anc.state_fun.R tests/testthat/make.data/anc.unc.R tests/testthat/make.data/convert.tokens.R tests/testthat/make.data/make.MCMCglmm.covar.data.R tests/testthat/make.data/make.data.R tests/testthat/make.data/make.test.data.R tests/testthat/make.data/multi.ace_internal.R tests/testthat/make.data/read.nexus.data.R tests/testthat/test-MCMCglmm.subsets.covar.plot.R tests/testthat/test-MCMCglmm.utilities.R tests/testthat/test-adonis.dispRity.R tests/testthat/test-as.covar.R tests/testthat/test-between.groups.R tests/testthat/test-bhatt.coeff.R tests/testthat/test-boot.matrix.R tests/testthat/test-char.diff.R tests/testthat/test-check.morpho.R tests/testthat/test-chrono.subsets.R tests/testthat/test-clean.data.R tests/testthat/test-covar.utilities.R tests/testthat/test-crown.stem.R tests/testthat/test-custom.subsets.R tests/testthat/test-dispRity.core.R tests/testthat/test-dispRity.covar.projections.R tests/testthat/test-dispRity.fast.R tests/testthat/test-dispRity.metric.R tests/testthat/test-dispRity.multi.R tests/testthat/test-dispRity.utilities.R tests/testthat/test-dispRity.wrapper.R tests/testthat/test-dist.helper.R tests/testthat/test-dtt.dispRity.R tests/testthat/test-get.bin.ages.R tests/testthat/test-make.metric.R tests/testthat/test-match.tip.edge.R tests/testthat/test-model.test.R tests/testthat/test-morpho.utilities.R tests/testthat/test-multi.ace.R tests/testthat/test-null.test.R tests/testthat/test-ordination.R tests/testthat/test-pair.plot.R tests/testthat/test-pgls.dispRity.R tests/testthat/test-plot.dispRity.R tests/testthat/test-print.dispRity.R tests/testthat/test-randtest.dispRity.R tests/testthat/test-randtest.dist.R tests/testthat/test-reduce.matrix.R tests/testthat/test-reduce.space.R tests/testthat/test-remove.zero.brlen.R tests/testthat/test-sanitizing.R tests/testthat/test-select.axes.R tests/testthat/test-set.root.time.R tests/testthat/test-sim.morpho.R tests/testthat/test-slice.tree.R tests/testthat/test-slide.nodes.R tests/testthat/test-space.maker.R tests/testthat/test-summary.dispRity.R tests/testthat/test-test.dispRity.R tests/testthat/test-test.metric.R tests/testthat/test-tree.age.R tests/visualise.projections.R tree_hackathon.Rmd