TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

This package provides functions for the analysis of alternative or aberrant splicing junctions and their creation from or association with somatic mutations. It integrates the output of several tools which predict splicing effects from mutation or RNA-seq data into a common splice junction format based on genomic coordinates. Splice junctions can be annotated with affected transcript sequences, CDS, and resulting peptide sequences.

install.packages("remotes")
remotes::install_github("TRON-Bioinformatics/splice2neo")