TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

This package provides functions for analyzing alternative splicing and aberrant splice junctions and their creation from or association with somatic mutations. It integrates the output of several tools that predict splicing effects from mutation or RNA-seq data into a unified splice junction format. Splice junctions can be annotated with affected transcript sequences, CDS, and resulting peptide sequences.

Getting started

Package details

Bioconductor views AlternativeSplicing
Maintainer
LicenseMIT + file LICENSE
Version0.6.11
URL https://github.com/TRON-Bioinformatics/splice2neo
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("TRON-Bioinformatics/splice2neo")
TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.