breakpoint2junc: Transforms breakpoint IDs (BPID) with given transcription...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Transforms breakpoint IDs (BPID) with given transcription strand into the junction ID of the format ⁠<chr>:<start>-:<end>:<strand>⁠

Description

Transforms breakpoint IDs (BPID) with given transcription strand into the junction ID of the format ⁠<chr>:<start>-:<end>:<strand>⁠

Usage

breakpoint2junc(breakpoint_id, strand)

Arguments

breakpoint_id	The breakpoint id in the format ⁠<chr>:<start>-<chr>:<end>⁠
strand	Strand information. "+" or "-"

Value

The junction id in the format ⁠<chr>:<start>-<end>:<strand>⁠

Examples

breakpoint_id <- "chr1:500000-chr1:1000000"
breakpoint2junc(breakpoint_id = breakpoint_id, strand = "+")

TRON-Bioinformatics/splice2neo documentation built on Nov. 9, 2024, 5:28 p.m.