breakpoint2junc: Transforms breakpoint IDs (BPID) with given transcription...
In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations
View source: R/define_junc_id.R
breakpoint2junc R Documentation
Transforms breakpoint IDs (BPID) with given transcription strand into the junction ID of the format <chr>:<start>-:<end>:<strand>
Description
Transforms breakpoint IDs (BPID) with given transcription strand into the junction ID of the format <chr>:<start>-:<end>:<strand>
Usage
breakpoint2junc(breakpoint_id, strand)
Arguments
breakpoint_id
The breakpoint id in the format <chr>:<start>-<chr>:<end>
strand
Strand information. "+" or "-"
Value
The junction id in the format <chr>:<start>-<end>:<strand>
Examples
breakpoint_id <- "chr1:500000-chr1:1000000"
breakpoint2junc(breakpoint_id = breakpoint_id, strand = "+")
TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.
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View source: R/define_junc_id.R
| breakpoint2junc | R Documentation |
Transforms breakpoint IDs (BPID) with given transcription strand into the junction ID of the format <chr>:<start>-:<end>:<strand>
Description
Transforms breakpoint IDs (BPID) with given transcription strand into the junction ID of the format <chr>:<start>-:<end>:<strand>
Usage
breakpoint2junc(breakpoint_id, strand)
Arguments
breakpoint_id |
The breakpoint id in the format |
strand |
Strand information. "+" or "-" |
Value
The junction id in the format <chr>:<start>-<end>:<strand>
Examples
breakpoint_id <- "chr1:500000-chr1:1000000"
breakpoint2junc(breakpoint_id = breakpoint_id, strand = "+")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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