generate_combined_dataset: Combines tibbles with junctions from SplAdder and LeafCutter...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Combines tibbles with junctions from SplAdder and LeafCutter into a combined dataset of expressed splice junctions

Description

Combines tibbles with junctions from SplAdder and LeafCutter into a combined dataset of expressed splice junctions

Usage

generate_combined_dataset(spladder_juncs, leafcutter_juncs)

Arguments

spladder_juncs	A tibble the junctions identified by SplAdder in standardized format
leafcutter_juncs	A tibble the junctions identified by LeafCutter in standardized format

Value

A combined table with unique junctions. The columns RNA_tool contains information which tools identified the given junction

Examples

path <-  system.file("extdata", "", package = "splice2neo")
spladder_juncs <- spladder_transform(path)
leafcutter_juncs <- leafcutter_transform(path)
dat.combined <- generate_combined_dataset(spladder_juncs, leafcutter_juncs)

TRON-Bioinformatics/splice2neo documentation built on March 25, 2024, 2:27 a.m.