combine_mut_junc: Combines data sets with junctions from several different...
In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations
View source: R/combine_mut_junc.R
combine_mut_junc R Documentation
Combines data sets with junctions from several different sources
Description
Combines data sets with junctions from several different sources
Usage
combine_mut_junc(junc_data_list)
Arguments
junc_data_list
A named list of tibbles with junctions. the name
should be the source, e.g. the tool name, such as spliceai or pangolin.
The individual tibbles should at least contain the columns mut_id,
tx_id, junc_id and might have individual sets of other tool/source
specific columns. It is recommended that these input tables are unique
with respect to mut_id, tx_id, junc_id, e.g. by using unique_mut_junc() or
unique_junc_mmsplice().
Value
A combined data set with unique junctions based on the columns
mut_id, tx_id, junc_id.
Additional columns in the input data.frames will be prefixed with the
tool/source name followed by an underscore _.
E.g. the column score in the input data sets spliceai becomes
spliceai_score. Additionally, for each tool/source with name <name>
an additional column <name>_detected will be added to indicate if a
given junction was detected with the indicated tool.
TRON-Bioinformatics/splice2neo documentation built on March 25, 2024, 2:27 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/combine_mut_junc.R
| combine_mut_junc | R Documentation |
Combines data sets with junctions from several different sources
Description
Combines data sets with junctions from several different sources
Usage
combine_mut_junc(junc_data_list)
Arguments
junc_data_list |
A named list of tibbles with junctions. the name
should be the source, e.g. the tool name, such as |
Value
A combined data set with unique junctions based on the columns
mut_id, tx_id, junc_id.
Additional columns in the input data.frames will be prefixed with the
tool/source name followed by an underscore _.
E.g. the column score in the input data sets spliceai becomes
spliceai_score. Additionally, for each tool/source with name <name>
an additional column <name>_detected will be added to indicate if a
given junction was detected with the indicated tool.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.