import_spladder: Imports SplAdder output from a given path with...
In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations
View source: R/spladder_parsing.R
import_spladder R Documentation
Imports SplAdder output from a given path with ".confirmed.txt.gz" files.
The results for one patient should be stored in the given path. Please note
that multiple (coordinated) exons skips (mult_exon_skip) are currently not supported.
Description
Imports SplAdder output from a given path with ".confirmed.txt.gz" files.
The results for one patient should be stored in the given path. Please note
that multiple (coordinated) exons skips (mult_exon_skip) are currently not supported.
Usage
import_spladder(path)
Arguments
path
The path to a folder with SplAdder output. This folder must contain the ".confirmed.txt.gz"
files for the alternative splicing type of interest.
Value
A list with tibbles. Each tibble is a SplAdder output for "A5SS",
"A3SS", "cassette_exon", "intron_retention", "mutex_exons".
TRON-Bioinformatics/splice2neo documentation built on Nov. 9, 2024, 5:28 p.m.
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View source: R/spladder_parsing.R
| import_spladder | R Documentation |
Imports SplAdder output from a given path with ".confirmed.txt.gz" files. The results for one patient should be stored in the given path. Please note that multiple (coordinated) exons skips (mult_exon_skip) are currently not supported.
Description
Imports SplAdder output from a given path with ".confirmed.txt.gz" files. The results for one patient should be stored in the given path. Please note that multiple (coordinated) exons skips (mult_exon_skip) are currently not supported.
Usage
import_spladder(path)
Arguments
path |
The path to a folder with SplAdder output. This folder must contain the ".confirmed.txt.gz" files for the alternative splicing type of interest. |
Value
A list with tibbles. Each tibble is a SplAdder output for "A5SS", "A3SS", "cassette_exon", "intron_retention", "mutex_exons".
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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