is_canonical: test if junction is canonical junction

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

test if junction is canonical junction

Description

test if junction is canonical junction

Usage

is_canonical(junc_id, ref_junc, exons_gr)

Arguments

junc_id	vector of junction id to test
ref_junc	vector of canonical reference junctions
exons_gr	GRanges of canonical exons

Value

logical vector of same length as junc_id indicating if the input junc_id is in the set of reference junctions ref_junc or consists of two directly adjacent positions (intron retention) and overlaps (completely within) a canonical exon from exons_gr.

TRON-Bioinformatics/splice2neo documentation built on Nov. 9, 2024, 5:28 p.m.