get_peptide_context: Get peptide context sequence given a tibble with...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Get peptide context sequence given a tibble with intron_retention normalized_protein_junc_pos is_first_reading_frame frame_shift exon1_end_AA exon1_end_AA_WT exon2_start_AA_WT, protein_len protein_len protein_length_difference protein

Description

Get peptide context sequence given a tibble with intron_retention normalized_protein_junc_pos is_first_reading_frame frame_shift exon1_end_AA exon1_end_AA_WT exon2_start_AA_WT, protein_len protein_len protein_length_difference protein

Usage

get_peptide_context(df, flanking_size = 14)

Arguments

df	Data frame with information about position of junction etc.
flanking_size	number amino acids left and right of the breakpoint or novel sequence part

TRON-Bioinformatics/splice2neo documentation built on March 25, 2024, 2:27 a.m.