is_start_on_exon: Tests if start or and end of junc is on exon.

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Tests if start or and end of junc is on exon.

Description

Tests if start or and end of junc is on exon.

Usage

is_start_on_exon(tx_lst, jx_lst, intron_retention)

Arguments

tx_lst	transcripts a GRangesList with transcripts defined as GRanges of exons.
jx_lst	splice junctions as GRanges objects in list format
intron_retention	logical vector indicating if junctions belong to an intron retention event

Value

a logical vector indicating if start or and end of junc is on exon.

TRON-Bioinformatics/splice2neo documentation built on Nov. 9, 2024, 5:28 p.m.