add_identified_in_RNA: This is a wrapper function to directly map the information if...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

This is a wrapper function to directly map the information if a junction predicted from WES data was found in RNA-seq by LeafCutter or SplAdder

Description

This is a wrapper function to directly map the information if a junction predicted from WES data was found in RNA-seq by LeafCutter or SplAdder

Usage

add_identified_in_RNA(mutation_juncs, path_to_spladder, path_to_leafcutter)

Arguments

mutation_juncs	The junction-transcript centric data predicted from WES data.
path_to_spladder	The path to the results from RNA-seq analysis with SplAdder
path_to_leafcutter	The path to the results from RNA-seq analysis with LeafCutter

Value

The junction-transcript centric data predicted from WES data is extended by the information if a respective aberrant junctions was identified by spladder or LeafCutter (identified_by_leafcutter, identified_by_spladder)

TRON-Bioinformatics/splice2neo documentation built on March 25, 2024, 2:27 a.m.