get_unknown_exon_intron_retention: Get the exon range flanking the other side of an intron...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Get the exon range flanking the other side of an intron retention of interest

Description

Get the exon range flanking the other side of an intron retention of interest

Usage

get_unknown_exon_intron_retention(tx_lst, tx_mod, jx_lst, start_on_exon)

Arguments

tx_lst	transcripts a GRangesList with transcripts defined as GRanges of exons.
tx_mod	modified transcripts a GRangesList with transcripts defined as GRanges of exons.
jx_lst	splice junctions as GRanges objects in list format
start_on_exon	a logical vector indicating if start or and end of junc is on exon.

Value

a GRange object with the exon range of the unknown exon

TRON-Bioinformatics/splice2neo documentation built on Nov. 9, 2024, 5:28 p.m.