View source: R/format_spliceai.R
format_spliceai | R Documentation |
Reformat the data for each annotated effect per row, filters effects to have a probability score not NA and score > 0, and removes gene symbol from data to make non-redundant output.
format_spliceai(spliceai_variants, gene_table = NULL)
spliceai_variants |
tibble with parsed
spliceAI mutations from |
gene_table |
optional tibble with the columns:
|
A tibble with splicing effects per row.
If gene_table
is provided, the formatted data contains a column with the gene_id
.
parse_spliceai
, annotate_mut_effect
spliceai_file <- system.file("extdata", "spliceai_output.vcf", package = "splice2neo")
df <- parse_spliceai(spliceai_file)
format_spliceai(df)
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