Files in TomMayo/kmermods
Represents Kmers As Integers Along The Genome
(Case Conflict).Rprofile
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.Rapp.history
R/Cpp_callers.R
R/RcppExports.R
R/counting.R
R/counting.R~
R/kmermods.R
R/operations_post.R
R/operations_post.R~
README.md
data/dna_input.rda
kmermods.Rproj
kmermods/DESCRIPTION
kmermods/NAMESPACE
kmermods/Read-and-delete-me
kmermods/man/kmermods-package.Rd
man/base2kmer.Rd
man/base5to10.Rd
man/base5to10_c.Rd
man/build_alphabet.Rd
man/convert10to5.Rd
man/convert10to5_c.Rd
man/convert10tobase_c.Rd
man/convert10tokmer.Rd
man/dna_input.Rd
man/kmer2base.Rd
man/kmer_counter.Rd
man/kmer_counter_c.Rd
man/kmer_counter_para_c.Rd
man/kmer_counter_wrapper.Rd
man/kmer_counter_wrapper_c.Rd
man/kmer_dot_prod.Rd
man/kmer_dot_prod_c.Rd
man/kmermods.Rd
man/kmerto10.Rd
man/l1_prox_op.Rd
man/let2base.Rd
man/let2base_c.Rd
man/log_reg_wrapper.Rd
man/loglik_linesearch.Rd
man/loglik_log_reg_grad.Rd
man/loglik_logreg.Rd
man/lower_kmer.Rd
man/mismatch_kmers.Rd
man/params_peaks_noslide.Rd
man/params_peaks_noslide_w_error.Rd
man/predict_peaks.Rd
man/rev_comp.Rd
man/rev_comp_c.Rd
man/rev_comp_meth.Rd
man/total_error.Rd
man/unwrap_kmers.Rd
man/unwrap_kmers_vect.Rd
man/update_paras.Rd
packrat/init.R
packrat/packrat.lock
packrat/packrat.opts
packrat/src/BH/BH_1.58.0-1.tar.gz
packrat/src/BiocGenerics/BiocGenerics_0.16.1.tar.gz
packrat/src/Biostrings/Biostrings_2.38.2.tar.gz
packrat/src/IRanges/IRanges_2.4.4.tar.gz
packrat/src/R6/R6_2.1.1.tar.gz
packrat/src/Rcpp/Rcpp_0.12.2.tar.gz
packrat/src/S4Vectors/S4Vectors_0.8.3.tar.gz
packrat/src/XVector/XVector_0.10.0.tar.gz
packrat/src/bitops/bitops_1.0-6.tar.gz
packrat/src/brew/brew_1.0-6.tar.gz
packrat/src/caTools/caTools_1.17.1.tar.gz
packrat/src/crayon/crayon_1.3.1.tar.gz
packrat/src/digest/digest_0.6.8.tar.gz
packrat/src/evaluate/evaluate_0.8.tar.gz
packrat/src/formatR/formatR_1.2.1.tar.gz
packrat/src/highr/highr_0.5.1.tar.gz
packrat/src/htmltools/htmltools_0.2.6.tar.gz
packrat/src/knitr/knitr_1.11.tar.gz
packrat/src/magrittr/magrittr_1.5.tar.gz
packrat/src/markdown/markdown_0.7.7.tar.gz
packrat/src/memoise/memoise_0.2.1.tar.gz
packrat/src/mime/mime_0.4.tar.gz
packrat/src/packrat/packrat_0.4.6-1.tar.gz
packrat/src/pbapply/pbapply_1.1-3.tar.gz
packrat/src/praise/praise_1.0.0.tar.gz
packrat/src/rmarkdown/rmarkdown_0.8.1.tar.gz
packrat/src/stringi/stringi_1.0-1.tar.gz
packrat/src/stringr/stringr_1.0.0.tar.gz
packrat/src/testthat/testthat_0.11.0.tar.gz
packrat/src/yaml/yaml_2.1.13.tar.gz
packrat/src/zlibbioc/zlibbioc_1.16.0.tar.gz
src/.gitignore
src/RcppExports.cpp
src/counting.cpp
src/counting.o-03b91043
src/kmermods_types.h
src/kmermods_types.h~
src/operations_post.cpp
tests/testthat.R
tests/testthat/test_counting.R
tests/testthat/test_operations_post.R
vignettes/kmermods-vignette.Rmd
