base2kmer: Converts a base representation (base 4 default) to the kmer

In TomMayo/kmermods: Represents Kmers As Integers Along The Genome

Description

Returns the kmer denoted by the integer

Usage

base2kmer(number, alph, k, base = 4)

Arguments

number	A vector of integers representing a number in base 4 (default) which correspond to a kmer.
alph	The alphabet we are using. A dataframe created using build_alphabet()
k	The length of kmers we are assessing. Used as a check.
base	The base of our representation, default is 4. This corresponds to the number of distinct nucleotides we are processing.

Value

A kmer, corresponding to the number in base 4(default)

Author(s)

Tom Mayo [e-mail]

TomMayo/kmermods documentation built on May 9, 2019, 4:53 p.m.