kmer2base: Converts a kmer to a number in base 4 (default)

In TomMayo/kmermods: Represents Kmers As Integers Along The Genome

Description

Returns a vector of integers, which correspond to a single number in base 4 (default) or whatever is defined in build_alphabet()

Usage

kmer2base(kmer, alph, k)

Arguments

kmer	A character vector of nucleotides to be converted the representation
alph	The alphabet we are using. A dataframe created using build_alphabet()
k	The length of kmers we are assessing. Used as a check.

Value

A vector of integers, representing a number in base 4(default)

Author(s)

Tom Mayo [e-mail]

TomMayo/kmermods documentation built on May 9, 2019, 4:53 p.m.