lower_kmer: Finds the (k-1)mer integer representation ffrom the kmer...
In TomMayo/kmermods: Represents Kmers As Integers Along The Genome
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Taking in an integer representing the kmer at that site, it returns the
integer for the (k-1)mer starting at the same place
Usage
1
lower_kmer(number_b10, k, base = 5)
Arguments
number_b10
An integer in base 10, representing a kmer
k
The length of kmers we are assessing. Used as a check.
base
The base of our representation, default is 4. This corresponds to
the number of distinct nucleotides we are processing.
Value
An integer, representing the (reverse complementary kmer)k-1)mer
Author(s)
Tom Mayo t.mayo@ed.ac.uk
Examples
1
lower_kmer(100, 3, base = 4)
TomMayo/kmermods documentation built on May 9, 2019, 4:53 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Taking in an integer representing the kmer at that site, it returns the integer for the (k-1)mer starting at the same place
Usage
1 | lower_kmer(number_b10, k, base = 5)
|
Arguments
number_b10 |
An integer in base 10, representing a kmer |
k |
The length of kmers we are assessing. Used as a check. |
base |
The base of our representation, default is 4. This corresponds to the number of distinct nucleotides we are processing. |
Value
An integer, representing the (reverse complementary kmer)k-1)mer
Author(s)
Tom Mayo t.mayo@ed.ac.uk
Examples
1 | lower_kmer(100, 3, base = 4)
|
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