kmer_counter_c: Represents the kmers present in the input with their integer...

In TomMayo/kmermods: Represents Kmers As Integers Along The Genome

Description

This runs over the input calculating the integer value for every kmer that begins at that location. It returns the resutls as a vector.

Usage

kmer_counter_c(dna, alph, k, base = 4)

Arguments

dna	The DNA sequence, as a character
alph	The alphabet we are using. A dataframe created using build_alphabet()
k	The length of kmers we are assessing. Used as a check.

Value

An integer vector corresponding to the kmers at each starting point in the DNA

Author(s)

Tom Mayo [e-mail]

Examples

alph <- c('G','A','T','C')
kmer_counter_c('GATCATCAT', alph, 4)

TomMayo/kmermods documentation built on May 9, 2019, 4:53 p.m.