Description Usage Arguments Value Author(s)
This calculates the total of the absolute values of the errors, given a set of parameters and outputs, over a given region.
1 | total_error(kmers_win, params, peaks, win_size, chrom_loc, warp_ = NULL)
|
kmers_win |
is a vector of integers of any length representing kmers in a region |
peaks |
is a matrix giving the locations of the peaks on the chromosome, the first column is starts, second is ends, inclusive, indexed from 1 |
win_size |
is the length of the sliding window we are using |
chrom_loc |
is the position of the first kmer along the chromosome - this avoids indexing errors when splitting up the data |
paras |
is a vector of length equal to the total number of kmers |
warp |
is a vector of length as long as the kmer vector, with the multiplicative weights for how much to warp the entry |
The total of the absolute errors, with a breakdown
Tom Mayo t.mayo@ed.ac.uk
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