log_reg_wrapper: Computes the gradient of the log likelihood of a logistic...

Description Usage Arguments Value Author(s)

Description

This calculates the prediction for each region, in a non-sliding scheme, calculates the error and returns the update vector for all of the regions.

Usage

1
log_reg_wrapper(kmers_win, params, peaks, win_size, chrom_loc, warp_ = NULL)

Arguments

kmers_win

is a vector of integers of any length representing kmers in a region

peaks

is a matrix giving the locations of the peaks on the chromosome, the first column is starts, second is ends, inclusive, indexed from 1

win_size

is the length of the sliding window we are using

chrom_loc

is the position of the first kmer along the chromosome - this avoids indexing errors when splitting up the data //' @param warp is a vector of length as long as the kmer vector, with the multiplicative weights for how much to warp the entry

paras

is a vector of length equal to the total number of kmers

Value

A vector, representing the gradient (direction to update the parameter vector)

Author(s)

Tom Mayo t.mayo@ed.ac.uk


TomMayo/kmermods documentation built on May 9, 2019, 4:53 p.m.