kmer_dot_prod_c: Computes the dot product of the parameters with the kmer...

In TomMayo/kmermods: Represents Kmers As Integers Along The Genome

Description

Computes the dot product of the parameters with the kmer counts, with or without it being warped

Usage

kmer_dot_prod_c(indices, params, warp_ = NULL)

Arguments

kmers	is a vector of integers of any length representing kmers over a window
paras	is a vector of length equal to the total number of kmers
warp	is a vector of length as long as the kmer vector, with the multiplicative weights for how much to warp the entry

Value

A double, representing the dot product of the parameters with what would usually be the vector of kmer abundances (warped or not)

Author(s)

Tom Mayo [e-mail]

Examples

kmers <- c(0,7,89,45,75,65,22,12)
paras <- rep(1,100)
kmer_dot_prod(kmers,paras)

TomMayo/kmermods documentation built on May 9, 2019, 4:53 p.m.