Description Usage Arguments Value Author(s) Examples
This runs over the input calculating the integer value for every kmer that begins at that location. It returns the resutls as a vector. It acts as a wrapper to kmer_counter, and takes in DNAStringSet objects from the Biostrings package (available from Bioconductor)
1 | kmer_counter_para_c(dna_input, num_cores = NaN, alph, k)
|
dna_input |
The DNA sequence, normall a whole chromosom as a DNAStringSet object (see Biostrings package) |
num_cores |
The number of cores to use. The default setting is the maximum available |
alph |
The alphabet we are using. A dataframe created using build_alphabet() |
k |
The length of kmers we are assessing. Used as a check. |
An integer vector corresponding to the kmers at each starting point in the DNA
Tom Mayo t.mayo@ed.ac.uk
1 2 3 |
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