kmer_dot_prod: Computes the dot product of the parameters with the kmer...

In TomMayo/kmermods: Represents Kmers As Integers Along The Genome

Description

Taking in an integer representing the kmer at that site, it returns the integer for the (k-1)mer starting at the same place

Usage

kmer_dot_prod(kmers, paras, warp = NA)

Arguments

kmers	is a vector of integers of any length representing kmers over a window
paras	is a vector of length equal to the total number of kmers
warp	is a vector of length as long as the kmer vector, with the multiplicative weights for how much to warp the entry

Value

An double, representing the dot product of the parameters with what would usually be the vector of kmer abundances (warped or not)

Author(s)

Tom Mayo [e-mail]

Examples

kmers <- c(0,7,89,45,75,65,22,12)
paras <- rep(1,100)
kmer_dot_prod(kmers,paras)

TomMayo/kmermods documentation built on May 9, 2019, 4:53 p.m.