Description Usage Arguments Value Author(s)
This calculates the prediction for each region, in a non-sliding scheme, calculates the error and returns the update vector for all of the regions.
1 2 | params_peaks_noslide_w_error(kmers_win, params, peaks, win_size, chrom_loc,
warp_ = NULL)
|
kmers_win |
is a vector of integers of any length representing kmers in a region |
peaks |
is a matrix giving the locations of the peaks on the chromosome, the first column is starts, second is ends, inclusive, indexed from 1 |
win_size |
is the length of the sliding window we are using |
chrom_loc |
is the position of the first kmer along the chromosome - this avoids indexing errors when splitting up the data //' @param warp is a vector of length as long as the kmer vector, with the multiplicative weights for how much to warp the entry |
paras |
is a vector of length equal to the total number of kmers |
A list, the first element is a vector representing the amount to update the parameter vector, the second is the sum of errors of different types
Tom Mayo t.mayo@ed.ac.uk
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.