kmer_counter: Represents the kmers present in the input with their integer...
In TomMayo/kmermods: Represents Kmers As Integers Along The Genome
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This runs over the input calculating the integer value for every kmer that
begins at that location. It returns the resutls as a vector.
Usage
1
kmer_counter(dna, alph, k)
Arguments
dna
The DNA sequence, as a character
alph
The alphabet we are using. A dataframe created using
build_alphabet()
k
The length of kmers we are assessing. Used as a check.
Value
An integer vector corresponding to the kmers at each starting point
in the DNA
Author(s)
Tom Mayo t.mayo@ed.ac.uk
Examples
1
2
alph <- kmermods::build_alphabet()
kmer_counter('GATCATCAT', alph, 4)
TomMayo/kmermods documentation built on May 9, 2019, 4:53 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
This runs over the input calculating the integer value for every kmer that begins at that location. It returns the resutls as a vector.
Usage
1 | kmer_counter(dna, alph, k)
|
Arguments
dna |
The DNA sequence, as a character |
alph |
The alphabet we are using. A dataframe created using build_alphabet() |
k |
The length of kmers we are assessing. Used as a check. |
Value
An integer vector corresponding to the kmers at each starting point in the DNA
Author(s)
Tom Mayo t.mayo@ed.ac.uk
Examples
1 2 | alph <- kmermods::build_alphabet()
kmer_counter('GATCATCAT', alph, 4)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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