Description Usage Arguments Value Author(s)
Given the kmers, set of peaks and parameters, this returns the log likelihood.
1  | loglik_logreg(kmers_win, params, peaks, win_size, chrom_loc, warp_ = NULL)
 | 
kmers_win | 
 is a vector of integers of any length representing kmers in a region  | 
peaks | 
 is a matrix giving the locations of the peaks on the chromosome, the first column is starts, second is ends, inclusive, indexed from 1  | 
win_size | 
 is the length of the sliding window we are using  | 
chrom_loc | 
 is the position of the first kmer along the chromosome - this avoids indexing errors when splitting up the data //' @param warp is a vector of length as long as the kmer vector, with the multiplicative weights for how much to warp the entry  | 
paras | 
 is a vector of length equal to the total number of kmers  | 
A double, representing the log likelihood
Tom Mayo t.mayo@ed.ac.uk
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