kmerto10: Converts a kmer to it's normal (base 10) integer...
In TomMayo/kmermods: Represents Kmers As Integers Along The Genome
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Returns the integer in base 10 that corresponds to the kmer
Usage
1
Arguments
kmer
A character vector of nucleotides to be converted the
representation
alph
The alphabet we are using. A dataframe created using
build_alphabet()
base
The base of our representation, default is 4. This corresponds to
the number of distinct nucleotides we are processing.
Value
An integer corresponding to the kmer
Author(s)
Tom Mayo t.mayo@ed.ac.uk
Examples
1
2
alph <- kmermods::build_alphabet()
kmerto10('GATC', alph, base = 4)
TomMayo/kmermods documentation built on May 9, 2019, 4:53 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Returns the integer in base 10 that corresponds to the kmer
Usage
1 |
Arguments
kmer |
A character vector of nucleotides to be converted the representation |
alph |
The alphabet we are using. A dataframe created using build_alphabet() |
base |
The base of our representation, default is 4. This corresponds to the number of distinct nucleotides we are processing. |
Value
An integer corresponding to the kmer
Author(s)
Tom Mayo t.mayo@ed.ac.uk
Examples
1 2 | alph <- kmermods::build_alphabet()
kmerto10('GATC', alph, base = 4)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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