One_SENSE_report: One_SENSE_report

In XinleiChen001/cytofexplorer: A data analysis package for cytof users

Description

进行OneSense分析，并进行画出两个坐标轴方向的Heatmap；

进行OneSense分析，并进行画出两个坐标轴方向的Heatmap；

Usage

One_SENSE_report(
  combined_data_sampled,
  perplexity = 30,
  max_iter = 1000,
  all_markers = all_markers,
  output_dir = "cluster_onesense_plots"
)

One_SENSE_report(
  combined_data_sampled,
  perplexity = 30,
  max_iter = 1000,
  all_markers = all_markers,
  output_dir = "cluster_onesense_plots"
)

Arguments

combined_data_sampled	数据框或者矩阵，待处理的表达数据
perplexity	tsne降维参数，困惑度
max_iter	tsne降维参数，迭代次数
all_markers	带有One_SENSE_F和One_SENSE_P的通道选择marker
output_dir	输出的目录名称

XinleiChen001/cytofexplorer documentation built on Oct. 31, 2020, 5:59 p.m.