draw_tsne_figs: draw_tsne_maps

Description Usage Arguments

View source: R/FlowSOM_tSNE_Output.R

Description

自动生成系列tSNE图;

Usage

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draw_tsne_figs(combined_data_plot, groups,
  cluster_color = dif_seq_rainbow, cluster_name = "metacluster",
  output_dir = "cluster_tsne_plots", major_cond = "Tissue_Type",
  reduction_dm1 = "tsne_1", reduction_dm2 = "tsne_2")

Arguments

combined_data_plot

数据框或者矩阵,附带有(meta)cluster、降维结果(t_sne_1,t_sne_2)的表达矩阵

groups

实验组的Metadata信息,其中必需包含列名:”Short_name“

cluster_color

tSNE图的亚群的配色方案,默认dif_seq_rainbow

cluster_name

选择groups中一个列名做为展现差异的major_cond

output_dir

输出数据文件夹名称

reduction_dm1

combined_data_plot降维产生的维度,默认"tsne_1"

reduction_dm2

combined_data_plot降维产生的维度,默认"tsne_2"


XinleiChen001/cytofexplorer documentation built on Feb. 3, 2019, 12:39 a.m.