API for aertslab/SCENIC
SCENIC (Single Cell rEgulatory Network Inference and Clustering)
| Global functions | |
|---|---|
| .H | Source code |
| .calcRSS.oneRegulon | Source code |
| .closeDevHeatmap | Source code |
| .openDev | Source code |
| .openDevHeatmap | Source code |
| .plotEmb_rgb | Source code |
| .plotEmb_rgb_checks | Source code |
| ScenicOptions | Man page |
| ScenicOptions-class | Man page |
| add_cell_annotation | Man page Source code |
| calcJSD | Source code |
| calcRSS | Man page Source code |
| checkAnnots | Man page Source code |
| dbLoadingAttempt | Man page Source code |
| dbVersion | Man page Source code |
| defaultDbNames | Man page |
| dotHeatmap | Man page |
| export2loom | Man page |
| export2scope | Source code |
| exportsForArboreto | Man page |
| exportsForGRNBoost | Source code |
| geneFiltering | Man page Source code |
| getDatabases | Man page |
| getDatabases,ScenicOptions-method | Man page |
| getDatasetInfo | Man page |
| getDatasetInfo,ScenicOptions-method | Man page |
| getDbAnnotations | Man page Source code |
| getDbTfs | Man page Source code |
| getIntName | Man page |
| getIntName,ScenicOptions-method | Man page |
| getOutName | Man page |
| getOutName,ScenicOptions-method | Man page |
| getRegulonName | Man page Source code |
| getSettings | Man page |
| getSettings,ScenicOptions-method | Man page |
| getStatus | Man page |
| getStatus,ScenicOptions-method | Man page |
| getTF | Man page Source code |
| importAUCfromText | Man page Source code |
| importArboreto | Man page Source code |
| importModulesGmt | Man page Source code |
| initializeScenic | Man page Source code |
| loadFile | Man page |
| loadFile,ScenicOptions-method | Man page |
| loadInt | Man page |
| loadInt,ScenicOptions-method | Man page |
| mergeOverlappingModules | Source code |
| onlyNonDuplicatedExtended | Man page Source code |
| plotEmb_rgb | Man page |
| plotEmb_rgb,ScenicOptions-method | Man page |
| plotEmb_rgb,list-method | Man page |
| plotEmb_rgb,scenicOptions-method | Man page |
| plotRSS | Man page Source code |
| plotRSS_heatmap | Source code |
| plotRSS_oneSet | Source code |
| plotTsne_AUCellApp | Man page Source code |
| plotTsne_AUCellHtml | Man page Source code |
| plotTsne_compareSettings | Man page Source code |
| regulonSelections | Source code |
| regulon_plotExpression | Man page Source code |
| regulonsToGeneLists | Man page Source code |
| runCorrelation | Man page Source code |
| runGenie3 | Man page Source code |
| runSCENIC_1_coexNetwork2modules | Man page Source code |
| runSCENIC_2_createRegulons | Man page Source code |
| runSCENIC_3_scoreCells | Man page Source code |
| runSCENIC_4_aucell_binarize | Man page Source code |
| selectRegulons | Man page Source code |
| show | Man page |
| show,ScenicOptions-method | Man page |
| topPerTf | Source code |
| tsneAUC | Man page Source code |
| tsneFileName | Source code |
| viewMotifs | Man page Source code |
| viewTable | Source code |
