Files in aertslab/SCENIC
SCENIC (Single Cell rEgulatory Network Inference and Clustering)
.Rbuildignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/question.md
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/add_cellAnnotation.R
R/aux_export2loom.R
R/aux_exportsForArboreto.R
R/aux_geneFiltering.R
R/aux_importsFromPython.R
R/aux_regulons.R
R/aux_rss.R
R/aux_viewMotifs.R
R/class_ScenicOptions.R
R/data_exports.R
R/dotHeatmap.R
R/plotTsne_AUCellApp.R
R/plotTsne_AUCellHtml.R
R/plotTsne_compareSettings.R
R/plotTsne_rgb.R
R/priv_openDev.R
R/runCorrelation.R
R/runGenie3.R
R/runSCENIC_1_coexNetwork2modules.R
R/runSCENIC_2_createRegulons.R
R/runSCENIC_2_createRegulons_Original.R
R/runSCENIC_3_scoreCells.R
R/runSCENIC_4.R
R/tsneAUC.R
README.md
Tutorials_JupyterNotebooks/SCENIC.png
Tutorials_JupyterNotebooks/SCENIC_tutorial_1-RunningVSN.html
Tutorials_JupyterNotebooks/SCENIC_tutorial_1-RunningVSN.ipynb
Tutorials_JupyterNotebooks/SCENIC_tutorial_2-ExploringOutput.html
Tutorials_JupyterNotebooks/SCENIC_tutorial_2-ExploringOutput.ipynb
data/defaultDbNames.RData
inst/CITATION
inst/doc/SCENIC_Running.html
inst/doc/SCENIC_Setup.html
inst/doc/detailedStep_0_geneFilter.html
inst/doc/detailedStep_1_coexNetwork2modules.html
inst/doc/detailedStep_2_createRegulons.html
inst/doc/detailedStep_3_scoreCells.html
inst/doc/detailedStep_4_aucell_binarize.html
inst/doc/importing_pySCENIC.html
inst/examples/SCENIC.loom
inst/examples/mouseBrain_toy.loom
man/ScenicOptions-class.Rd
man/add_cell_annotation.Rd
man/calcRSS.Rd
man/defaultDbNames.Rd
man/dotHeatmap.Rd
man/export2loom.Rd
man/exportsForArboreto.Rd
man/geneFiltering.Rd
man/getDbAnnotations.Rd
man/getDbTfs.Rd
man/getRegulonName.Rd
man/getTF.Rd
man/importAUCfromText.Rd
man/importArboreto.Rd
man/importModulesGmt.Rd
man/onlyNonDuplicatedExtended.Rd
man/plotEmb_rgb.Rd
man/plotRSS.Rd
man/plotTsne_AUCellApp.Rd
man/plotTsne_AUCellHtml.Rd
man/plotTsne_compareSettings.Rd
man/regulon_plotExpression.Rd
man/regulonsToGeneLists.Rd
man/runCorrelation.Rd
man/runGenie3.Rd
man/runSCENIC_1_coexNetwork2modules.Rd
man/runSCENIC_2_createRegulons.Rd
man/runSCENIC_3_scoreCells.Rd
man/runSCENIC_4_aucell_binarize.Rd
man/selectRegulons.Rd
man/tsneAUC.Rd
man/viewMotifs.Rd
vignettes/FAQ.md
vignettes/SCENIC_Running.Rmd
vignettes/SCENIC_Setup.Rmd
vignettes/cell.csl
vignettes/corrected.css
vignettes/detailedStep_0_geneFilter.Rmd
vignettes/detailedStep_1_coexNetwork2modules.Rmd
vignettes/detailedStep_2_createRegulons.Rmd
vignettes/detailedStep_3_scoreCells.Rmd
vignettes/detailedStep_4_aucell_binarize.Rmd
vignettes/importing_pySCENIC.Rmd
vignettes/references.bib
