View source: R/selection_funks.R
mrBayesProteinTree | R Documentation |
Generates a valid input file for Mr Bayes, which will generate a Bayesian phylogeny from a multiple amino acid sequence alignment.
mrBayesProteinTree(aa.msa, mr.bayes.dir, gene.group.name,
mr.bayes.n.chains = getOption("mc.cores", 4))
aa.msa |
an instance of Biostrings::AAStringSet representing the MSA |
mr.bayes.dir |
a valid file path to the output directory in which to store the Mr Bayes analysis related files |
gene.group.name |
the name of the group of proteins to generate the Bayesian tree for |
mr.bayes.n.chains |
number of chains to use in Mr. Bayes, default is 'mc.cores' or 4, if 'mc.cores' is not set. |
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