nonConservedCompositeAnnotations: Identifies those composite annotations that are less frequent...

In asishallab/GeneFamilies: Analyses different properties of gene families

Identifies those composite annotations that are less frequent than the most frequent ones found for the argument genes and based upon argument gene (function) annotations. For more details about composite annotations see function 'compositeAnnotations(...)'

Description

Identifies those composite annotations that are less frequent than the most frequent ones found for the argument genes and based upon argument gene (function) annotations. For more details about composite annotations see function 'compositeAnnotations(...)'

Usage

nonConservedCompositeAnnotations(gene.accs, gene.annos = all.ipr,
  gene.col = 1, anno.col = 2)

Arguments

gene.accs	The identifiers or accessions of the genes to compute the entropy for
gene.annos	The data.frame holding the annotations for the genes in 'gene.accs'. Default is all available InterPro annotations expected to be found in 'all.ipr'
gene.col	the column of 'gene.annos' in which to lookup the gene identifiers or gene accessions. Default is 1
anno.col	the column of 'gene.annos' in which to lookup the function annotation for the genes in 'gene.accs'. Default is 2

Value

An instance of base::table

asishallab/GeneFamilies documentation built on May 22, 2023, 11:30 a.m.