selectSignificantlyEnrichedAnnotations: Selects those results obtained from calling...

In asishallab/GeneFamilies: Analyses different properties of gene families

Selects those results obtained from calling enrichedAnnotations that are significant and adds informative information to the annotations extracted from the anno.db.

Description

Selects those results obtained from calling enrichedAnnotations that are significant and adds informative information to the annotations extracted from the anno.db.

Usage

selectSignificantlyEnrichedAnnotations(enriched.annotations,
  p.val.cutoff = 0.01, anno.db = ipr.db, anno.name = "NAME")

Arguments

enriched.annotations	A numeric vector with values the P-Values and names the annotations. See enrichedAnnotations(...) for details.
p.val.cutoff	The significance cuto-off to be applied. Default is 0.01
anno.db	A list with names being the annotations as in the names of enriched.annotations and values are lists with a slot holding human readable information about the annotation.
anno.name	The slot name of the lists held in anno.db to extract for human readable information about the annotations.

Value

A data.frame with three columns: 1. Annotation, 2. P.Value.Adjusted, and 3. Annotation.Name

asishallab/GeneFamilies documentation built on May 22, 2023, 11:30 a.m.