tree4Busted: Annotates a phylogenetic tree in such amanner that foreground...

View source: R/selection_funks.R

tree4BustedR Documentation

Annotates a phylogenetic tree in such amanner that foreground branches are recognized by HYPHY's BUSTED analysis.

Description

Annotates a phylogenetic tree in such amanner that foreground branches are recognized by HYPHY's BUSTED analysis.

Usage

tree4Busted(phylo.tree, foreground.nodes)

Arguments

phylo.tree

an instance of class ape::phylo

foreground.nodes

integer vector holding the nodes that are selected as foreground

Value

A BUSTED annotated copy of 'phylo.tree' Mark foreground tips / leaves: Mark foreground inner nodes:


asishallab/GeneFamilies documentation built on July 28, 2024, 11:44 a.m.