View source: R/Preprocessing.R
PerformEmptyDropletFiltering | R Documentation |
PerformEmptyDropletFiltering
PerformEmptyDropletFiltering(
seuratRawData,
fdrThreshold = 0.001,
emptyDropNIters = 10000,
emptyDropsLower = 200,
useEmptyDropsCellRanger = FALSE,
nExpectedCells = 8000
)
seuratRawData |
Raw data |
fdrThreshold |
FDR threshold, passed directly to PerformEmptyDrops() |
emptyDropNIters |
Number of iterations, passed directly to PerformEmptyDrops() |
emptyDropsLower |
Passed directly to emptyDrops(). The lower bound on the total UMI count, at or below which all barcodes are assumed to correspond to empty droplets. |
useEmptyDropsCellRanger |
If TRUE, will use DropletUtils emptyDropsCellRanger instead of emptyDrops |
nExpectedCells |
Only applied if emptyDropsCellRanger is selected. Passed to n.expected.cells argument |
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