PolyPhenFromMaf: orchestrates creation of polyphen input file from .maf file
In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.
Description
Usage
Arguments
Value
View source: R/PolyPhenProcessing_functions.R
Description
Allows user to create valid polyphen input file from TCGAs somatic mutation data storage format, .maf.
Usage
1
PolyPhenFromMaf(mafFname = NULL, outFname = NULL)
Arguments
mafFname
character string. The file name and full or relative path to the maf input file
outFname
character string. The name of the file for the polyphen input file to be saved to.
Value
A list of diagnostic information, with each slot containing a specific data point, such as "Rows of mutation data found in .maf file input"
biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.
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Description Usage Arguments Value
View source: R/PolyPhenProcessing_functions.R
Description
Allows user to create valid polyphen input file from TCGAs somatic mutation data storage format, .maf.
Usage
1 | PolyPhenFromMaf(mafFname = NULL, outFname = NULL)
|
Arguments
mafFname |
character string. The file name and full or relative path to the maf input file |
outFname |
character string. The name of the file for the polyphen input file to be saved to. |
Value
A list of diagnostic information, with each slot containing a specific data point, such as "Rows of mutation data found in .maf file input"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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