Description Usage Arguments Value
View source: R/PolyPhenProcessing_functions.R
Allows user to create valid polyphen input file from TCGAs somatic mutation data storage format, .maf.
1 | PolyPhenFromMaf(mafFname = NULL, outFname = NULL)
|
mafFname |
character string. The file name and full or relative path to the maf input file |
outFname |
character string. The name of the file for the polyphen input file to be saved to. |
A list of diagnostic information, with each slot containing a specific data point, such as "Rows of mutation data found in .maf file input"
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