PolyPhenFromMaf: orchestrates creation of polyphen input file from .maf file

Description Usage Arguments Value

View source: R/PolyPhenProcessing_functions.R

Description

Allows user to create valid polyphen input file from TCGAs somatic mutation data storage format, .maf.

Usage

1
PolyPhenFromMaf(mafFname = NULL, outFname = NULL)

Arguments

mafFname

character string. The file name and full or relative path to the maf input file

outFname

character string. The name of the file for the polyphen input file to be saved to.

Value

A list of diagnostic information, with each slot containing a specific data point, such as "Rows of mutation data found in .maf file input"


biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.