patientSummaryToNozzleReport: Make a Nozzle report from an individual patient's results
In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.
Description
Usage
Arguments
Value
View source: R/nozzleBuilder.R
Description
Make a Nozzle report from an individual patient's results
Usage
1
patientSummaryToNozzleReport(patSum, rootReportName, resSetName)
Arguments
patSum
The list element, including item name of the patient's summary (note this must include the patient name, thus what is given by list[1] would be correct, not what is subscripted like list[[1]])
rootReportName
The file path to the root nozzle report ex: "./output/study_mutSigAnalysisOnly/results/somatic_mutation_aberration_summary.nozzleReport"
resSetName
The name of the results set being added to the nozzle page.
Value
The path to the file that the patient summary was saved to.
biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.
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Description Usage Arguments Value
View source: R/nozzleBuilder.R
Description
Make a Nozzle report from an individual patient's results
Usage
1 | patientSummaryToNozzleReport(patSum, rootReportName, resSetName)
|
Arguments
patSum |
The list element, including item name of the patient's summary (note this must include the patient name, thus what is given by |
rootReportName |
The file path to the root nozzle report ex: "./output/study_mutSigAnalysisOnly/results/somatic_mutation_aberration_summary.nozzleReport" |
resSetName |
The name of the results set being added to the nozzle page. |
Value
The path to the file that the patient summary was saved to.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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