setCutoff: Set the cutoff for drug screen score

In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.

Description

Anything above cutoff will be considered to be drug-sensitive.

Usage

setCutoff(pgm, s, verbose = T, cutoffScore = NULL)

Arguments

pgm	A patient gene matrix: bipartate graph with patient ids as columns, genes as rows and cell values the drug screen score.
s	A settings list object.
verbose	A logical flag indicating if additional information should be displayed.
cutoffScore	Optional, the score, above which genes will be considered sensitive. If not provided, interactive prompt will be shown to the user.

Value

list with slots pgm, a logical patient gene matrix and s the settings list object.

biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.