setNodeColors: setNodeColors()

In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.

Description

setNodeColors()

Usage

setNodeColors(w, study, node_color_choices, targeted, active = NULL,
  default.color = NULL)

Arguments

w	the cytoscape connection
study	A Study object. Used to access Path_Detail object, and determine which genes are in which pathways
node_color_choices	a vector, length 3, containing the hex color codes for the targeted, the unactive and the active nodes
targeted	the vector of nodes considered to be targeted
active	the vector of nodes considered to be active
default.color	the hex color used as the default color

biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.