API for bomeara/phybase
Basic functions for phylogenetic analysis
| Global functions | |
|---|---|
| ChangeBrlen | Man page |
| FindSpnodeDownGenenode | Man page |
| NJst | Man page |
| PhyBase | Man page |
| Phybase | Man page |
| ancandtime | Man page |
| ancestor | Man page |
| bootstrap | Man page |
| bootstrap.mulgene | Man page |
| change.root | Man page |
| coal.sptree | Man page |
| coaltime | Man page |
| consense | Man page |
| del.node | Man page |
| genetree.vector | Man page |
| getcoaltime | Man page |
| getncoal | Man page |
| is.clock | Man page |
| is.phybase2phylo | Man page |
| is.rootedtree | Man page |
| loglikeSP | Man page |
| maxtree | Man page |
| mrca.2nodes | Man page |
| mrca.nodes | Man page |
| mutation_exp | Man page |
| name2node | Man page |
| nancdist | Man page |
| noclock2clock | Man page |
| node.height | Man page |
| node2name | Man page |
| offspring.nodes | Man page |
| offspring.nodes.string | Man page |
| offspring.species | Man page |
| pair.dist | Man page |
| pair.dist.dna | Man page |
| pair.dist.mulseq | Man page |
| partition.tree | Man page |
| phybase | Man page |
| plottree | Man page |
| popsize | Man page |
| populationMutation | Man page |
| postdist.tree | Man page |
| rank.nodes | Man page |
| rdirichlet | Man page |
| read.dna.seq | Man page |
| read.tree.nodes | Man page |
| read.tree.string | Man page |
| root.tree | Man page |
| rooted.tree | Man page |
| rootoftree | Man page |
| sctree | Man page |
| sim.coaltree | Man page |
| sim.coaltree.phylo | Man page |
| sim.coaltree.sp | Man page |
| sim.coaltree.sp.mu | Man page |
| sim.dna | Man page |
| simSeqfromSp | Man page |
| simnucleotide | Man page |
| site.pattern | Man page |
| sortmat | Man page |
| species.name | Man page |
| spstructure | Man page |
| sptree | Man page |
| star.sptree | Man page |
| steac.sptree | Man page |
| subtree | Man page |
| subtree.length | Man page |
| swap.nodes | Man page |
| treedist | Man page |
| tripleProb | Man page |
| tripleloglike | Man page |
| triplenumber | Man page |
| triplepara | Man page |
| unrooted.tree | Man page |
| unroottree | Man page |
| upgma | Man page |
| upgmaR | Man page |
| write.dna | Man page |
| write.subtree | Man page |
| write.tree.string | Man page |
