API for brucemoran/somenone
R functions required by the somenone NextFlow nf-core pipeline
| Global functions | |
|---|---|
| anno_cgc_cna | Man page Source code |
| anno_ens_cna | Man page Source code |
| at_least_two | Man page |
| bin_granges | Man page |
| bin_maker | Man page |
| cna_master_muts | Man page Source code |
| collapse_gr_list | Man page |
| download_chimerkb4 | Man page Source code |
| facets_cna_call | Man page Source code |
| facets_cna_consensus | Man page Source code |
| facets_jointsegs_parse_to_gr | Man page Source code |
| findin_chimerkb4 | Man page Source code |
| gr_super_alt_plot | Man page Source code |
| gr_super_set | Man page Source code |
| granges_sdin | Man page Source code |
| gridss_annotate_gr | Man page Source code |
| gridss_bedpe_list | Man page Source code |
| gridss_parse_multi_vcf | Man page Source code |
| gridss_parse_plot | Man page Source code |
| hello | Man page |
| loh_summary | Man page |
| make_pairtree_input | Man page Source code |
| make_pairtree_json | Man page Source code |
| master_intersect_cna_grlist | Man page |
| master_intersect_snv_grlist | Man page Source code |
| master_mcols | Man page |
| mut_cn_to_pyclone | Man page Source code |
| output_out_list | Man page Source code |
| parse_cn_list | Man page Source code |
| parse_input_df | Man page Source code |
| plot_circos_sv | Man page Source code |
| plot_consensus | Man page Source code |
| plot_from_tsv | Man page |
| plot_out_list | Man page Source code |
| plot_single | Man page Source code |
| prep_plot_circos_sv | Man page Source code |
| process_in_list | Man page Source code |
| rdata_gr_list | Man page Source code |
| seqlengths_df | Man page |
| sub_hgvsp | Man page Source code |
| summarise_master | Man page |
| test_seqinfo | Man page |
| variant_consensus | Man page Source code |
| vcf_parse_gr | Man page Source code |
| vcf_vep_ann_parse_soma_gr | Man page Source code |
