gr_super_alt_plot: Wrapper of main functions

In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline

Wrapper of main functions

Description

Wrapper of main functions

Usage

gr_super_alt_plot(
  var_list,
  name_callers,
  impacts,
  taga,
  included_order,
  which_genome
)

Arguments

var_list	is a nested list of VEP annotated [[caller]][[samples1..n]]
name_callers	two of the variant callers
impacts	VEP impacts (one or combination of "HIGH", "MODERATE", "MODIFIER", "LOW")
included_order	oredering of samples for plotting
which_genome	hg19 or hg38
raw_list	is a nested list of unfiltered calls [[caller]][[samples1..n]]
tag	is a string used to tag output

Value

GRanges object of all of single-letter HGVS protein IDs

brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.